nf-core/seqfu/derep @ 0.0.0-6c4ed3a
Summary
Dereplicate FASTX sequences, removing duplicate sequences and printing the number of identical sequences in the sequence header. Can dereplicate already dereplicated FASTA files, summing the numbers found in the headers.
Get started
Add the following snippet to your workflow script to include this module.
include { SEQFU_DEREP } from 'nf-core/seqfu/derep'
License
MIT License
Process
Name
|
SEQFU_DEREP |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fastas
file
|
Input files (mainly FASTA, FASTQ supported) *.{fa,fna,faa,fasta,fq,fastq}[.gz]
|
Output
2 channels
#1
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*_derep.fasta.gz
file
|
dereplicated file (FASTA format) *.{fasta.gz}
|
#2
versions_seqfu
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqfu
string
|
The name of the tool |
seqfu version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| seqfu | DNA sequence utilities for FASTX files | https://telatin.github.io/seqfu2/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:44:20 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fseqfu%2Fderep/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/seqfu/derep/blobs/sha256:1f0451e266b160dee654038203f19e672072304bfc5ca1017538d9070eedee74 |
| Size | 2.6 KB |
| Checksum | sha256:1f0451e266b160dee654038203f19e672072304bfc5ca1017538d9070eedee74 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:44:20 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:30:14 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:36:24 (UTC) | 3 | 2.5 KB |