nf-core/seqkit/seq @ 0.0.0-0c7146d
Summary
Transforms sequences (extract ID, filter by length, remove gaps, reverse complement...)
Get started
Add the following snippet to your workflow script to include this module.
include { SEQKIT_SEQ } from 'nf-core/seqkit/seq'
License
MIT License
Process
Name
|
SEQKIT_SEQ |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fastx
file
|
Input fasta/fastq file *.{fsa,fas,fa,fasta,fastq,fq,fsa.gz,fas.gz,fa.gz,fasta.gz,fastq.gz,fq.gz}
|
Output
2 channels
#1
fastx
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.*
file
|
Output fasta/fastq file *.{fasta,fasta.gz,fastq,fastq.gz}
|
#2
versions_seqkit
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqkit
string
|
The name of the tool |
seqkit version | sed 's/^.*v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| seqkit | A cross-platform and ultrafast toolkit for FASTA/Q file manipulation | https://bioinf.shenwei.me/seqkit/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:36:45 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fseqkit%2Fseq/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/seqkit/seq/blobs/sha256:a9b98413b397eb1f12a894b028472e35f097e7ca7730a9470ccf7bf9fb7aa150 |
| Size | 2.8 KB |
| Checksum | sha256:a9b98413b397eb1f12a894b028472e35f097e7ca7730a9470ccf7bf9fb7aa150 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:44:35 (UTC) | 4 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:30:28 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:36:45 (UTC) | 3 | 2.8 KB |