nf-core/sigprofiler @ 0.0.0-0c7146d
Summary
mutational signature deconvolution of cancer cells
Get started
Add the following snippet to your workflow script to include this module.
include { SIGPROFILER } from 'nf-core/sigprofiler'
License
MIT License
Process
Name
|
SIGPROFILER |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
tsv_list
file
|
joint tsv file with validated mutations by CNAqc *.{tsv}
|
genome
string
|
Reference genome name to use with SigProfiler (e.g. "GRCh37", "GRCh38") |
|---|
genome_installed_path
file
|
path to installed reference genome (optional) |
|---|
Output
2 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
results_sigprofiler
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
results/*
directory
|
folder with saved output results results/*
|
| Tool | Description | Homepage |
|---|---|---|
| sigprofilermatrixgenerator | Sigprofilermatrixgenerator is a Python-based tool. It creates mutational matrices for all types of somatic mutations (SBS, DBS, and IDs) | n/a |
| sigprofilerextractor | SigProfilerExtractor is a Python-based tool. It allows de novo extraction of mutational signatures from data generated in a matrix format, identification of the number of operative mutational signatures, and their activities in each sample. | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:37:57 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsigprofiler/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/sigprofiler/blobs/sha256:59eea0ac0d5e1e7ebc0ab85caf6f876f52f766e155a8840c6fb8d1eb9d47786b |
| Size | 6.4 KB |
| Checksum | sha256:59eea0ac0d5e1e7ebc0ab85caf6f876f52f766e155a8840c6fb8d1eb9d47786b |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:46:10 (UTC) | 3 | 6.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:37:57 (UTC) | 4 | 6.4 KB |