nf-core/slamdunk/map @ 0.0.0-3fc6d40
Summary
Slamdunk read mapping using NextGenMap’s SLAMSeq alignment settings.
Get started
Add the following snippet to your workflow script to include this module.
include { SLAMDUNK_MAP } from 'nf-core/slamdunk/map'
License
MIT License
Process
Name
|
SLAMDUNK_MAP |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
input
file
|
Input FASTQ or BAM file(s) for SLAMseq analysis *.{bam,fastq,fq,fastq.gz,fq.gz}
|
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. |
|---|---|
fasta
file
|
Reference genome FASTA file *.{fasta,fa,fas,fna}
|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.bam
file
|
Mapped BAM file *.bam
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| slamdunk | Slamdunk is a software tool for SLAMseq data analysis that performs mapping, filtering, SNP calling, and quantification of metabolic RNA labeling experiments. | http://t-neumann.github.io/slamdunk/docs.html |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:32:06 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fslamdunk%2Fmap/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/slamdunk/map/blobs/sha256:9dab03a1802ccefacbad71130052f160a47affa05bddcdf1be4f9f770dac0eb0 |
| Size | 2.8 KB |
| Checksum | sha256:9dab03a1802ccefacbad71130052f160a47affa05bddcdf1be4f9f770dac0eb0 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:46:25 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:32:06 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:39:03 (UTC) | 3 | 2.7 KB |