Nextflow Registry | nf-core/spotiflow@0.0.0-6c4ed3a

nf-core/spotiflow @ 0.0.0-6c4ed3a

Spotiflow, accurate and efficient spot detection with stereographic flow.

imaging image microscopy transcriptomics spatial spot detection

Latest version: 0.0.0-6c4ed3a

Total downloads: 4

Source: nf-core/modules

Authors: @migueLib

Maintainers: @migueLib

Spotiflow, accurate and efficient spot detection with stereographic flow.

Add the following snippet to your workflow script to include this module.

include { SPOTIFLOW } from 'nf-core/spotiflow'

MIT License

Process

`Name`	`SPOTIFLOW`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`image_2d` file	2D TIF Image file with the spots to be detected `*.{tif,tiff,png,jpg,jpeg}`

Output 2 channels

#1 spots tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.csv` file	CSV file with the X, Y positions of the detected spots. `*.{csv}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
spotiflow	Spotiflow allows for accurate and efficient spot detection with stereographic flow	https://weigertlab.github.io/spotiflow/

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:47:08 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fspotiflow/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/spotiflow/blobs/sha256:b25f38293bc72a13d4c7882a334e3bc4b1bdf4e9f05c15904b0a069d74528bbe
Size	2.3 KB
Checksum	sha256:b25f38293bc72a13d4c7882a334e3bc4b1bdf4e9f05c15904b0a069d74528bbe
Downloads	2

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:47:08 (UTC)		2	2.3 KB
0.0.0-0c7146d	08 Apr 2026 19:40:12 (UTC)		2	2.3 KB