nf-core/syri @ 0.0.0-6c4ed3a
Summary
Syri compares alignments between two chromosome-level assemblies and identifies synteny and structural rearrangements.
Get started
Add the following snippet to your workflow script to include this module.
include { SYRI } from 'nf-core/syri'
License
MIT License
Name
|
SYRI |
|---|
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
infile
file
|
File containing alignment coordinates *.{table, sam, bam, paf}
|
meta2
map
|
Groovy Map containing sample information e.g. |
|---|---|
query_fasta
file
|
Query genome for the alignments *.{fasta}
|
meta3
map
|
Groovy Map containing sample information e.g. |
|---|---|
reference_fasta
file
|
Reference genome for the alignments *.{fasta}
|
file_type
string
|
Input file type which is one of T: Table, S: SAM, B: BAM, P: PAF |
|---|
syri
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*syri.out
file
|
Syri output file *syri.{out}
|
error
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.error.log
file
|
Error log if syri fails. This error log enables the pipeline to detect if syri has failed due to one of its known limitations and pass the information to the user in a user-friendly manner such as a HTML report *.error.{log}
|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| syri | Synteny and rearrangement identifier between whole-genome assemblies | https://github.com/schneebergerlab/syri |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:49:09 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsyri/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/syri/blobs/sha256:2081846bd088e917b833eb1236c6424d156d54547684e82d056d0a6b5ec4498c |
| Size | 2.9 KB |
| Checksum | sha256:2081846bd088e917b833eb1236c6424d156d54547684e82d056d0a6b5ec4498c |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:49:09 (UTC) | 4 | 2.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:34:08 (UTC) | 3 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:42:41 (UTC) | 4 | 2.9 KB |