Nextflow Modules
Showing module(s) with keyword "chromosome"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bedtools/sort | Process | bed sort bedtools chromosome | Sorts a feature file by chromosome and other criteria. |
| nf-core/custom/getchromsizes | Process | fasta chromosome indexing | Generates a FASTA file of chromosome sizes and a fasta index file |
| nf-core/dnaapler/all | Process | reorientation genome assembly chromosome plasmid phage dnaA fasta gfa | Reorients complete bacterial chromosomes, plasmids and phages to start at a conserved gene |
| nf-core/plotsr | Process | genomics synteny rearrangements chromosome | Plotsr generates high-quality visualisation of synteny and structural rearrangements between multiple genomes. |
| nf-core/samtools/faidx | Process | index fasta faidx chromosome | Index FASTA file, and optionally generate a file of chromosome sizes |
| nf-core/samtools/idxstats | Process | stats mapping counts chromosome bam sam cram | Reports alignment summary statistics for a BAM/CRAM/SAM file |
| nf-core/syri | Process | genomics synteny rearrangements chromosome | Syri compares alignments between two chromosome-level assemblies and identifies synteny and structural rearrangements. |