Nextflow Registry | nf-core/tcoffee/extractfrompdb@0.0.0-3fc6d40

nf-core/tcoffee/extractfrompdb @ 0.0.0-3fc6d40

Reformats the header of PDB files with t-coffee

reformatting pdb genomics

Latest version: 0.0.0-6c4ed3a

Total downloads: 8

Source: nf-core/modules

Authors: @luisas

Reformats the header of PDB files with t-coffee

Add the following snippet to your workflow script to include this module.

include { TCOFFEE_EXTRACTFROMPDB } from 'nf-core/tcoffee/extractfrompdb'

MIT License

Process

`Name`	`TCOFFEE_EXTRACTFROMPDB`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`pdb` file	Input pdb to be reformatted

Output 2 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 formatted_pdb tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`${prefix}.pdb` file	Formatted pdb file `*`

Tool	Description	Homepage
tcoffee	A collection of tools for Computing, Evaluating and Manipulating Multiple Alignments of DNA, RNA, Protein Sequences and Structures.	http://www.tcoffee.org/Projects/tcoffee/

Version	0.0.0-3fc6d40
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	22 Apr 2026 15:34:19 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Ftcoffee%2Fextractfrompdb/0.0.0-3fc6d40/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/tcoffee/extractfrompdb/blobs/sha256:5ad6f6f45eb9dfb9cd15445b2df3ac492c30cf6d663d77aab9af98d963ceae01
Size	2.5 KB
Checksum	sha256:5ad6f6f45eb9dfb9cd15445b2df3ac492c30cf6d663d77aab9af98d963ceae01
Downloads	2

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:49:30 (UTC)	3	2.4 KB
0.0.0-3fc6d40	22 Apr 2026 15:34:19 (UTC)	2	2.5 KB
0.0.0-0c7146d	08 Apr 2026 19:43:15 (UTC)	3	2.4 KB