nf-core/td2/longorfs @ 0.0.0-6c4ed3a
Summary
TD2 identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly
Get started
Add the following snippet to your workflow script to include this module.
include { TD2_LONGORFS } from 'nf-core/td2/longorfs'
License
MIT License
Process
Name
|
TD2_LONGORFS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
Fasta file containing the target transcript sequences *.{fasta}
|
Output
2 channels
#1
orfs
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/longest_orfs.{cds,gff3,pep}
file
|
Files containing the longest ORFs predicted from the input transcript sequences ${prefix}/longest_orfs.{cds,gff3,pep}
|
#2
versions_td2
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
TD2.LongOrfs
string
|
The tool name |
1.0.6
string
|
The tool version |
| Tool | Description | Homepage |
|---|---|---|
| td2 | TD2 identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly | https://github.com/Markusjsommer/TD2 |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:49:37 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ftd2%2Flongorfs/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/td2/longorfs/blobs/sha256:fd32eacc9b1eef70677a02172ddfe424b1808c6054cede7824d9e5a1aa8ae04f |
| Size | 2.4 KB |
| Checksum | sha256:fd32eacc9b1eef70677a02172ddfe424b1808c6054cede7824d9e5a1aa8ae04f |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:49:37 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:43:24 (UTC) | 3 | 2.4 KB |