Nextflow Modules
Showing module(s) with keyword "transcripts"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/gffcompare | Process | transcripts gtf merge compare | Compare, merge, annotate and estimate accuracy of generated gtf files |
| nf-core/opt/flip | Process | opt opt flip transcripts off-target probes align probes | flip corrects probes that are aligning to the opposite strand of their intended target genes by reverse complementing them |
| nf-core/opt/stat | Process | opt opt stat transcripts binding predictions off-target probes align probes summary stats | stat summarizes opt binding predictions |
| nf-core/opt/track | Process | opt opt track transcripts off-target probes align probes traget transcriptome | track aligns query probe sequences to any target transcriptome |
| nf-core/td2/longorfs | Process | td2 orfs longorfs transcripts | TD2 identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly |
| nf-core/xeniumranger/relabel | Process | spatial relabel gene labels transcripts xeniumranger | The xeniumranger relabel module allows you to change the gene labels applied to decoded transcripts. |
| nf-core/xeniumranger/rename | Process | spatial rename gene labels transcripts xeniumranger | The xeniumranger rename module allows you to change the sample region_name and cassette_name throughout all the Xenium Onboard Analysis output files that contain this information. |