nf-core/td2/predict @ 0.0.0-0c7146d
Summary
TD2 identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly
Get started
Add the following snippet to your workflow script to include this module.
include { TD2_PREDICT } from 'nf-core/td2/predict'
License
MIT License
Process
Name
|
TD2_PREDICT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
Transcripts fasta file *.fasta
|
orfs_dir
file
|
Directory containing the ORF prediction files generated by the orfs_dir/
|
Output
2 channels
#1
predictions
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/*.TD2.{bed,cds,gff3,pep}
file
|
Files containing the TD2 ORF predictions for the input transcript sequences ${prefix}/*.TD2.{bed,cds,gff3,pep}
|
#2
versions_td2
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
TD2.Predict
string
|
The tool name |
1.0.6
string
|
The tool version |
| Tool | Description | Homepage |
|---|---|---|
| td2 | TD2 identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly | https://github.com/Markusjsommer/TD2 |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:43:26 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ftd2%2Fpredict/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/td2/predict/blobs/sha256:d005c6a945758f3622438730b2ada5ed3a8ceaeea9c3c90fd52e7f48523865a1 |
| Size | 2.6 KB |
| Checksum | sha256:d005c6a945758f3622438730b2ada5ed3a8ceaeea9c3c90fd52e7f48523865a1 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:49:38 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:43:26 (UTC) | 4 | 2.6 KB |