nf-core/trimal @ 0.0.0-6c4ed3a
Summary
trimAl is a tool for the automated removal of spurious sequences or poorly aligned regions from a multiple sequence alignment.
Get started
Add the following snippet to your workflow script to include this module.
include { TRIMAL } from 'nf-core/trimal'
License
MIT License
Process
Name
|
TRIMAL |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
aln
file
|
Input file in several formats (e.g., clustal, fasta, nexus, phylip32, phylip40, pir). *
|
out_format
string
|
Output format (e.g., pir, mega, nexus, clustal, fasta, phylip). Default is set to "trimal". *
|
|---|
Output
3 channels
#1
trimal
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.${out_extension}
file
|
Trimmed multiple sequence alignment file *.*
|
#2
summary
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.html
file
|
HTML summary file, needs -htmlout to be set in ext.args along with a trimming method *.html
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| trimal | A tool for automated alignment trimming in large-scale phylogenetic analyses. | https://trimal.cgenomics.org/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:50:09 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ftrimal/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/trimal/blobs/sha256:6b70390b53a9d0464d178f9675e5a4e7f07ba4d59b0a3b6b7472129cbb3de02f |
| Size | 3.0 KB |
| Checksum | sha256:6b70390b53a9d0464d178f9675e5a4e7f07ba4d59b0a3b6b7472129cbb3de02f |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:50:09 (UTC) | 1 | 3.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:34:45 (UTC) | 1 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:44:10 (UTC) | 2 | 3.0 KB |