Nextflow Modules
Showing module(s) with keyword "alignment"
| Module | Keywords | Description |
|---|---|---|
| nf-core/abra2 | alignment realignment indels bam dna rna splice-junctions assembly | Assembly Based ReAligner for next-generation sequencing data |
| nf-core/alignoth | genomics alignment visualization pileup plotting | Creating alignment plots from bam files |
| nf-core/amps | malt MaltExtract HOPS amps alignment metagenomics ancient DNA aDNA palaeogenomics archaeogenomics microbiome authentication damage edit distance post Post-processing visualisation | Post-processing script of the MaltExtract component of the HOPS package |
| nf-core/ashlar | image_processing alignment registration | Alignment by Simultaneous Harmonization of Layer/Adjacency Registration |
| nf-core/busco/phylogenomics | phylogenies orthologs alignment | Construct species phylogenies using BUSCO proteins |
| nf-core/bwa/mem | mem bwa alignment map fastq bam sam | Performs fastq alignment to a fasta reference using BWA |
| nf-core/bwamem2/mem | mem bwa alignment map fastq bam sam | Performs fastq alignment to a fasta reference using BWA |
| nf-core/bwameme/mem | mem bwa bwamem2 bwameme alignment map fastq bam sam cram | Performs fastq alignment to a fasta reference using BWA-MEME |
| nf-core/bwameth/align | bwameth alignment 3-letter genome map methylation 5mC methylseq bisulphite bisulfite fastq bam | Performs alignment of BS-Seq reads using bwameth |
| nf-core/cdhit/cdhit | cluster protein alignment fasta | Cluster protein sequences using sequence similarity |
| nf-core/cdhit/cdhitest | cluster nucleotide alignment fasta | Cluster nucleotide sequences using sequence similarity |
| nf-core/chromap/chromap | chromap alignment map fastq bam sam hi-c atac-seq chip-seq trimming duplicate removal | Performs preprocessing and alignment of chromatin fastq files to fasta reference files using chromap. |
| nf-core/clipkit | alignment trimming phylogeny | A multiple sequence alignment-trimming algorithm for accurate phylogenomic inference. |
| nf-core/clustalo/align | alignment MSA genomics | Align sequences using Clustal Omega |
| nf-core/clusty | cluster network contig scaffold alignment protein | Clusty is a tool for large-scale clustering using sparse distance matrices, suitable for datasets with millions of objects. |
| nf-core/cmaple | phylogeny |