nf-core/ucsc/gtftogenepred @ 0.0.0-6c4ed3a
Summary
compute average score of bigwig over bed file
Get started
Add the following snippet to your workflow script to include this module.
include { UCSC_GTFTOGENEPRED } from 'nf-core/ucsc/gtftogenepred'
License
MIT License
Process
Name
|
UCSC_GTFTOGENEPRED |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gtf
file
|
GTF file *.{gtf}
|
Output
3 channels
#1
refflat
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.refflat
file
|
refflat file *.{refflat}
|
#2
genepred
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.genepred
file
|
genepred file *.{genepred}
|
#3
versions_ucsc
tuple
${task.process}
string
|
The name of the process |
|---|---|
ucsc
string
|
The name of the tool |
482
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ucsc | Convert GTF files to GenePred format | http://hgdownload.cse.ucsc.edu/admin/exe/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:50:29 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fucsc%2Fgtftogenepred/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ucsc/gtftogenepred/blobs/sha256:5d78ee6bc31e7f02341af2daba5013721a6a0abd6770baa477faa4343f4ad569 |
| Size | 2.5 KB |
| Checksum | sha256:5d78ee6bc31e7f02341af2daba5013721a6a0abd6770baa477faa4343f4ad569 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:50:29 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:35:06 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:44:40 (UTC) | 3 | 2.5 KB |