Nextflow Modules
Showing module(s) with keyword "ucsc"
| Module | Keywords | Description |
|---|---|---|
| nf-core/ucsc/bedclip | bed genomics ucsc | Remove lines from bed file that refer to off-chromosome locations. |
| nf-core/ucsc/bedgraphtobigwig | bedgraph bigwig ucsc bedgraphtobigwig converter | Convert a bedGraph file to bigWig format. |
| nf-core/ucsc/bedtobigbed | bed bigbed ucsc bedtobigbed converter | Convert file from bed to bigBed format |
| nf-core/ucsc/bigwigaverageoverbed | bigwig bedGraph ucsc | compute average score of bigwig over bed file |
| nf-core/ucsc/gtftogenepred | gtf genepred refflat ucsc gtftogenepred | compute average score of bigwig over bed file |
| nf-core/ucsc/liftover | bed ucsc ucsc/liftover | convert between genome builds |
| nf-core/ucsc/wigtobigwig | wig bigwig ucsc | Convert ascii format wig file to binary big wig format |