Nextflow Modules
Showing module(s) with keyword "ucsc"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/ucsc/bedclip | Process | bed genomics ucsc | Remove lines from bed file that refer to off-chromosome locations. |
| nf-core/ucsc/bedgraphtobigwig | Process | bedgraph bigwig ucsc bedgraphtobigwig converter | Convert a bedGraph file to bigWig format. |
| nf-core/ucsc/bedtobigbed | Process | bed bigbed ucsc bedtobigbed converter | Convert file from bed to bigBed format |
| nf-core/ucsc/bigwigaverageoverbed | Process | bigwig bedGraph ucsc | compute average score of bigwig over bed file |
| nf-core/ucsc/gtftogenepred | Process | gtf genepred refflat ucsc gtftogenepred | Convert GTF files to GenePred format |
| nf-core/ucsc/liftover | Process | bed ucsc ucsc/liftover | convert between genome builds |
| nf-core/ucsc/wigtobigwig | Process | wig bigwig ucsc | Convert ascii format wig file to binary big wig format |