nf-core/ultra/index @ 0.0.0-6c4ed3a
Summary
uLTRA aligner - A wrapper around minimap2 to improve small exon detection - Index gtf file for reads alignment
Get started
Add the following snippet to your workflow script to include this module.
include { ULTRA_INDEX } from 'nf-core/ultra/index'
License
MIT License
Process
Name
|
ULTRA_INDEX |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing genome information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
A fasta file of the genome to use as reference for mapping *.{fasta, fa}
|
#2
tuple
meta2
map
|
Groovy Map containing gtf information e.g. [ id:'test' ] |
|---|---|
gtf
file
|
An annotation file of the reference genome in GTF format *.gtf
|
Output
3 channels
#1
pickle
tuple
meta
map
|
Groovy Map containing genome information e.g. [ id:'test' ] |
|---|---|
*.pickle
file
|
Index file *.pickle
|
#2
database
tuple
meta
map
|
Groovy Map containing genome information e.g. [ id:'test' ] |
|---|---|
*.db
file
|
Index database *.db
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| ultra | Splice aligner of long transcriptomic reads to genome. | https://github.com/ksahlin/uLTRA |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:50:34 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fultra%2Findex/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ultra/index/blobs/sha256:aea5958de5f99363f209066b5bf56c38484d3e93b4d49b57fb76c24179d59214 |
| Size | 3.2 KB |
| Checksum | sha256:aea5958de5f99363f209066b5bf56c38484d3e93b4d49b57fb76c24179d59214 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:50:34 (UTC) | 3 | 3.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:35:10 (UTC) | 3 | 3.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:44:47 (UTC) | 4 | 3.1 KB |