nf-core/ultra/pipeline @ 0.0.0-6c4ed3a
Summary
uLTRA aligner - A wrapper around minimap2 to improve small exon detection
Get started
Add the following snippet to your workflow script to include this module.
include { ULTRA_PIPELINE } from 'nf-core/ultra/pipeline'
License
MIT License
Process
Name
|
ULTRA_PIPELINE |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
reads
file
|
A fasta or fastq file of reads to align *.{fasta,fastq}
|
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
fasta file of reference genome *.fasta
|
#3
tuple
meta3
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
gtf
file
|
Genome annotation file *.gtf
|
Output
2 channels
#1
sam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.sam
file
|
The aligned reads in sam format *.sam
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| ultra | Splice aligner of long transcriptomic reads to genome. | https://github.com/ksahlin/uLTRA |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:50:35 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fultra%2Fpipeline/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ultra/pipeline/blobs/sha256:c75af4e454d4d6ef6dc3225f31cc237e9ed79d89f4b868692417463b2e889f34 |
| Size | 2.7 KB |
| Checksum | sha256:c75af4e454d4d6ef6dc3225f31cc237e9ed79d89f4b868692417463b2e889f34 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:50:35 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:35:11 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:44:49 (UTC) | 2 | 2.7 KB |