nf-core/unicycler @ 0.0.0-6c4ed3a
Summary
Assembles bacterial genomes
Get started
Add the following snippet to your workflow script to include this module.
include { UNICYCLER } from 'nf-core/unicycler'
License
MIT License
Process
Name
|
UNICYCLER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
shortreads
file
|
List of input Illumina FastQ files of size 1 and 2 for single-end and paired-end data, respectively. |
longreads
file
|
List of input FastQ files of size 1, PacBio or Nanopore long reads. |
Output
4 channels
#1
gfa
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.assembly.gfa.gz
file
|
gfa file containing assembly *.{assembly.gfa.gz}
|
#2
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
unicycler log file *.{log}
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#4
scaffolds
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.scaffolds.fa.gz
file
|
Fasta file containing scaffolds *.{scaffolds.fa.gz}
|
| Tool | Description | Homepage |
|---|---|---|
| unicycler | Hybrid assembly pipeline for bacterial genomes | https://github.com/rrwick/Unicycler |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:50:43 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Funicycler/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/unicycler/blobs/sha256:2744189ffce8b2825e04e91c61db1979dc8d9cfdde508ee215e200060b23c4fb |
| Size | 2.7 KB |
| Checksum | sha256:2744189ffce8b2825e04e91c61db1979dc8d9cfdde508ee215e200060b23c4fb |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:50:43 (UTC) | 4 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:45:02 (UTC) | 3 | 2.7 KB |