nf-core/varlociraptor/callvariants @ 0.0.0-0c7146d
Summary
Call variants for a given scenario specified with the varlociraptor calling grammar, preprocessed by varlociraptor preprocessing
Get started
Add the following snippet to your workflow script to include this module.
include { VARLOCIRAPTOR_CALLVARIANTS } from 'nf-core/varlociraptor/callvariants'
License
MIT License
Process
Name
|
VARLOCIRAPTOR_CALLVARIANTS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcfs
file
|
Sorted VCF/BCF file containing sample observations, Can also be a list of files *.{vcf,bcf,vcf.gz}
|
scenario
file
|
Yaml file containing scenario information (optional) *.{yml,yaml}
|
scenario_aliases
list
|
List of aliases for the scenario (optional) |
Output
2 channels
#1
bcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bcf
file
|
BCF file containing sample observations *.bcf
|
#2
versions_varlociraptor
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
varlociraptor
string
|
The tool name |
varlociraptor --version | sed 's/^varlociraptor //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| varlociraptor | Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control. | https://varlociraptor.github.io/docs/estimating/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:45:25 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fvarlociraptor%2Fcallvariants/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/varlociraptor/callvariants/blobs/sha256:f6724e58bd02dcb384cad889495b929b013f769f23464fef7e05c5606a31c113 |
| Size | 3.3 KB |
| Checksum | sha256:f6724e58bd02dcb384cad889495b929b013f769f23464fef7e05c5606a31c113 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:51:45 (UTC) | 3 | 3.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:45:25 (UTC) | 2 | 3.3 KB |