nf-core/vcf2zarr/explode @ 0.0.0-0c7146d
Summary
Convert VCF(s) to intermediate columnar format
Get started
Add the following snippet to your workflow script to include this module.
include { VCF2ZARR_EXPLODE } from 'nf-core/vcf2zarr/explode'
License
MIT License
Process
Name
|
VCF2ZARR_EXPLODE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
vcf
file
|
Input VCF file *.{vcf,vcf.gz}
|
Output
2 channels
#1
icf
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.icf
directory
|
Output intermediate columnar format (ICF) *.{icf}
|
#2
versions_vcf2zarr
tuple
${task.process}
string
|
The name of the process |
|---|---|
vcf2zarr
string
|
The name of the tool |
vcf2zarr --version |& sed -n "s/.* //p"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| vcf2zarr | Convert bioinformatics data to Zarr | https://sgkit-dev.github.io/bio2zarr/vcf2zarr/overview.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:46:14 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fvcf2zarr%2Fexplode/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/vcf2zarr/explode/blobs/sha256:2ae499c136a04842c02bc2f78c5c78ade8bfde7f7797edacf0bc799820f74be2 |
| Size | 3.0 KB |
| Checksum | sha256:2ae499c136a04842c02bc2f78c5c78ade8bfde7f7797edacf0bc799820f74be2 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:52:01 (UTC) | 3 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:46:14 (UTC) | 1 | 3.0 KB |