nf-core/vcflib/vcffixup @ 0.0.0-0c7146d
Summary
Generates a VCF stream where AC and NS have been generated for each record using sample genotypes.
Get started
Add the following snippet to your workflow script to include this module.
include { VCFLIB_VCFFIXUP } from 'nf-core/vcflib/vcffixup'
License
MIT License
Process
Name
|
VCFLIB_VCFFIXUP |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
Compressed VCF file *.{.vcf.gz,vcf}
|
tbi
file
|
Index of VCF file *.vcf.gz.tbi
|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.vcf.gz
file
|
Compressed VCF file *.vcf.gz
|
#2
versions_vcflib
tuple
${task.process}
string
|
The name of the process |
|---|---|
vcflib
string
|
The name of the tool |
1.0.14
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| vcflib | Command-line tools for manipulating VCF files | https://github.com/vcflib/vcflib |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:46:23 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fvcflib%2Fvcffixup/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/vcflib/vcffixup/blobs/sha256:2d64b219faf9b2cc5828d5812e6c7e333ed7187dff34ba11e9aae04364b5b0de |
| Size | 2.4 KB |
| Checksum | sha256:2d64b219faf9b2cc5828d5812e6c7e333ed7187dff34ba11e9aae04364b5b0de |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:52:07 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:46:23 (UTC) | 2 | 2.4 KB |