nf-core/vsearch/dereplicate @ 0.0.0-6c4ed3a
Summary
Merge strictly identical sequences contained in filename. Identical sequences are defined as having the same length and the same string of nucleotides (case insensitive, T and U are considered the same).
Get started
Add the following snippet to your workflow script to include this module.
include { VSEARCH_DEREPLICATE } from 'nf-core/vsearch/dereplicate'
License
MIT License
Process
Name
|
VSEARCH_DEREPLICATE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
Sequences to be sorted in FASTA format *.{fasta,fa,fasta.gz,fa.gz,.fna,.fna.gz}
|
Output
4 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
${prefix}.log
file
|
a log file of the run ${prefix}.log
|
#2
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
${prefix}.fasta
file
|
dereplicated fasta ${prefix}.fasta
|
#3
clustering
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
${prefix}.uc
file
|
dereplicated derep.uc file ${prefix}.uc
|
#4
versions_vsearch
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
vsearch
string
|
The tool name |
vsearch --version 2>&1 | sed -n "1s/.*v\([0-9.]*\).*/\\1/p"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| vsearch | A versatile open source tool for metagenomics (USEARCH alternative) | https://github.com/torognes/vsearch |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:52:43 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fvsearch%2Fdereplicate/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/vsearch/dereplicate/blobs/sha256:a2fc0fa1900c3851111133aa3db603839a9aef2526037c0c2824468d94202bd7 |
| Size | 2.7 KB |
| Checksum | sha256:a2fc0fa1900c3851111133aa3db603839a9aef2526037c0c2824468d94202bd7 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:52:43 (UTC) | 4 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:36:37 (UTC) | 1 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:47:15 (UTC) | 1 | 2.6 KB |