Nextflow Modules
Showing module(s) with keyword "vsearch"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/vsearch/cluster | Process | vsearch clustering microbiome | Cluster sequences using a single-pass, greedy centroid-based clustering algorithm. |
| nf-core/vsearch/dereplicate | Process | vsearch/dereplicate vsearch dereplicate amplicon sequences metagenomics genomics population genetics | Merge strictly identical sequences contained in filename. Identical sequences are defined as having the same length and the same string of nucleotides (case insensitive, T and U are considered the same). |
| nf-core/vsearch/fastqfilter | Process | vsearch/fastqfilter vsearch fastqfilter amplicon sequences metagenomics genomics population genetics | Performs quality filtering and / or conversion of a FASTQ file to FASTA format. |
| nf-core/vsearch/sintax | Process | vsearch sintax taxonomy | Taxonomic classification using the sintax algorithm. |
| nf-core/vsearch/sort | Process | vsearch/sort vsearch sort amplicon sequences metagenomics genomics population genetics | Sort fasta entries by decreasing abundance (--sortbysize) or sequence length (--sortbylength). |
| nf-core/vsearch/usearchglobal | Process | vsearch usearch alignment fasta | Compare target sequences to fasta-formatted query sequences using global pairwise alignment. |