nf-core/vuegen @ 0.0.0-0c7146d

The VueGen nf-core module is designed to automate report generation from outputs produced by other modules, subworkflows, or pipelines. The module integrates the VueGen Python library and customizes it for compatibility with the Nextflow environment. VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications.

reports data-visualization streamlit quarto

Latest version: 0.0.0-3fc6d40

Total downloads: 8

Source: nf-core/modules

Authors: @sayalaruano @enryH @albsantosdel

Maintainers: @sayalaruano @enryH @albsantosdel

VueGen Module

Dockerimage

The dockerimage is needed as both quarto and the TinyTeX distribution are installed inside the container to make vuegen work properly. At runtime especially apptainer does not support installing packages on the fly to read-only directories.

#!/bin/bash
set -euo pipefail

ORG="quay.io/nf-core"
VERSION="v0.5.1"

# 1. Build & push the base image (nextflow version)
docker buildx build \
  --platform linux/amd64,linux/arm64 \
  --push \
  -t ${ORG}/vuegen:${VERSION} \
  -f Dockerfile .

Process

`Name`	`VUEGEN`

Input 3 channels

`input_type` string	Specifies whether the input is a configuration file ('config') or a directory ('directory'). `^(config\|directory)$`

`input_path` file	Path to the input directory or configuration file used by VueGen.

`report_type` string	The type of report to generate. Options include 'streamlit', 'html', 'pdf', 'docx', 'odt', 'revealjs', 'pptx', and 'jupyter'. `^(streamlit\|html\|pdf\|docx\|odt\|revealjs\|pptx\|jupyter)$`

Output 2 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 output_folder

`*report` directory	The output directory containing the generated report files. If `report_type` is 'streamlit', a 'streamlit_report' directory is created, containing subfolders for each section with Python scripts corresponding to the web application's pages. For other report types, a 'quarto_report' directory is generated, containing a Quarto Markdown (qmd) file that structures the entire report. `*report`

Tool	Description	Homepage
vuegen	The VueGen nf-core module is designed to automate report generation from outputs produced by other modules, subworkflows, or pipelines. The module integrates the VueGen Python library and customizes it for compatibility with the Nextflow environment. VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications.	https://github.com/Multiomics-Analytics-Group/vuegen

Version	0.0.0-0c7146d
Commit ID	3fc6d40d163d89ae44d40a00b9017d5a9df5170e
Release Date	08 Apr 2026 19:47:29 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fvuegen/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/vuegen/blobs/sha256:c5097e32f46ea2f79af8de834f2deee2347dbf7e0a8d90f2fd561fd0a1cbda8c
Size	4.7 KB
Checksum	sha256:c5097e32f46ea2f79af8de834f2deee2347dbf7e0a8d90f2fd561fd0a1cbda8c
Downloads	5

Version	Date	Status	Downloads	Size
0.0.0-3fc6d40	22 Apr 2026 15:36:47 (UTC)		3	4.7 KB
0.0.0-0c7146d	08 Apr 2026 19:47:29 (UTC)		5	4.7 KB