nf-core/wfmash @ 0.0.0-0c7146d
Summary
a pangenome-scale aligner
Get started
Add the following snippet to your workflow script to include this module.
include { WFMASH } from 'nf-core/wfmash'
License
MIT License
Process
Name
|
WFMASH |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta_gz
file
|
BGZIPPED FASTA target file to create the mappings from. {fa.gz,fna.gz,fasta.gz}
|
paf
file
|
Optional inpute file in PAF format to derive the precise alignments for. *.{paf}
|
gzi
file
|
The GZI index of the input FASTA file. *.{gzi}
|
fai
file
|
The FASTA index of the input FASTA file. *.{fai}
|
query_self
boolean
|
If set to true, the input FASTA will also be used as the query FASTA. |
|---|
fasta_query_list
file
|
Optional inpute file in FASTA format specifying the query sequences as a list. *.{fa,fna,fasta}
|
|---|
Output
2 channels
#1
paf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.paf
file
|
Alignments in PAF format *.{paf}
|
#2
versions_wfmash
tuple
${task.process}
string
|
The name of the process |
|---|---|
wfmash
string
|
The name of the tool |
wfmash --version 2>&1 | cut -f 1 -d "-" | cut -f 2 -d "v"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| wfmash | a pangenome-scale aligner | https://github.com/waveygang/wfmash |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | cd0ad387832473916b1f1c80c2ca673a7883bf94 |
| Release Date | 08 Apr 2026 19:47:31 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fwfmash/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/wfmash/blobs/sha256:0514482dc001fd08750b1c5a53860ff6c1ebabfcfae9597e443f58daabd49438 |
| Size | 2.5 KB |
| Checksum | sha256:0514482dc001fd08750b1c5a53860ff6c1ebabfcfae9597e443f58daabd49438 |
| Downloads | 0 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-cd0ad38 | 19 May 2026 15:01:49 (UTC) | 0 | 2.7 KB | ↔ | |
| 0.0.0-6c4ed3a | 23 Apr 2026 15:52:53 (UTC) | 0 | 2.5 KB | ↔ | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:36:48 (UTC) | 0 | 2.5 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 19:47:31 (UTC) | 0 | 2.5 KB | - |