Nextflow Registry | nf-core/whatshap/stats@0.0.0-6c4ed3a

nf-core/whatshap/stats @ 0.0.0-6c4ed3a

Compute statistics from phased variant file using Whatshap

vcf whatshap stats phasing phase

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @eliottBo

Maintainers: @eliottBo

Compute statistics from phased variant file using Whatshap

Add the following snippet to your workflow script to include this module.

include { WHATSHAP_STATS } from 'nf-core/whatshap/stats'

MIT License

Process

`Name`	`WHATSHAP_STATS`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1' ]
`vcf` file	Phased variant vcf file `*.vcf`

`include_tsv_output` boolean	Whether to include TSV output file

`include_gtf_output` boolean	Whether to include GTF output file

`inlude_block_output` boolean	Whether to include block list output file

Output 5 channels

#1 gtf tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1' ]
`${prefix}.gtf` file	Whatshap stats output in GTF format `*.gtf`

#2 log tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1' ]
`${prefix}.log` file	Whatshap stats output in TXT format `*.log`

#3 tsv tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1' ]
`${prefix}.tsv` file	Whatshap stats output in TSV format `*.tsv`

#4 block tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1' ]
`${prefix}.txt` file	Whatshap stats block list output `*.txt`

#5 versions_whatshap tuple

`${task.process}` string	The name of the process
`whatshap` string	The name of the tool
`whatshap --version` string	The expression to obtain the version of the tool

Tool	Description	Homepage
whatshap	Phase genomic variants using DNA sequencing reads (haplotype assembly).	https://whatshap.readthedocs.io

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:53:01 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fwhatshap%2Fstats/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/whatshap/stats/blobs/sha256:856098dd8fd5934cf42e775331e7771c68b4cc7b4f3f64bd17d212c08d422663
Size	2.9 KB
Checksum	sha256:856098dd8fd5934cf42e775331e7771c68b4cc7b4f3f64bd17d212c08d422663
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:53:01 (UTC)	3	2.9 KB
0.0.0-3fc6d40	22 Apr 2026 15:36:52 (UTC)	3	2.9 KB
0.0.0-0c7146d