Nextflow Modules
Showing module(s) with keyword "bisulfite sequencing"
| Module | Keywords | Description |
|---|---|---|
| nf-core/biscuit/align | biscuit DNA methylation WGBS scWGBS bisulfite sequencing aligner bam | Aligns single- or paired-end reads from bisulfite-converted libraries to a reference genome using Biscuit. |
| nf-core/biscuit/biscuitblaster | biscuit DNA methylation WGBS scWGBS bisulfite sequencing aligner bam | A fast, compact one-liner to produce duplicate-marked, sorted, and indexed BAM files using Biscuit |
| nf-core/biscuit/bsconv | biscuit DNA methylation WGBS scWGBS bisulfite sequencing aligner bam filter | Summarize and/or filter reads based on bisulfite conversion rate |
| nf-core/biscuit/epiread | biscuit DNA methylation WGBS scWGBS bisulfite sequencing aligner bam | Summarizes read-level methylation (and optionally SNV) information from a Biscuit BAM file in a standard-compliant BED format. |
| nf-core/biscuit/index | biscuit DNA methylation WGBS scWGBS bisulfite sequencing index reference fasta | Indexes a reference genome for use with Biscuit |
| nf-core/biscuit/mergecg | biscuit DNA methylation WGBS scWGBS bisulfite sequencing aligner bed | Merges methylation information for opposite-strand C's in a CpG context |
| nf-core/biscuit/qc | biscuit DNA methylation WGBS scWGBS bisulfite sequencing index BAM quality control | Perform basic quality control on a BAM file generated with Biscuit |
| nf-core/biscuit/vcf2bed | biscuit DNA methylation WGBS scWGBS bisulfite sequencing aligner vcf | Summarizes methylation or SNV information from a Biscuit VCF in a standard-compliant BED file. |