Nextflow Modules
Showing module(s) with keyword "canvas"
| Module | Keywords | Description |
|---|---|---|
| nf-core/canvas/germline | CNV copy number variants germline WGS canvas | Calls germline copy number variants (CNVs) from whole genome sequencing data using Illumina Canvas in SmallPedigree-WGS mode. Although named SmallPedigree-WGS, this mode is recommended for single germline samples as well as small pedigrees. The module accepts aligned reads (BAM), germline SNV calls, and sex-specific ploidy information, and outputs a VCF with copy number status across the genome together with a coverage-and-variant-frequency file used for downstream segmentation. |