Nextflow Modules
Showing module(s) with keyword "fixmate"
| Module | Keywords | Description |
|---|---|---|
| nf-core/samtools/fixmate | fixmate samtools insert size repair bam paired read pairs | Samtools fixmate is a tool that can fill in information (insert size, cigar, mapq) about paired end reads onto the corresponding other read. Also has options to remove secondary/unmapped alignments and recalculate whether reads are proper pairs. |
| nf-core/samtools/sormadup | cat collate fixmate sort markduplicates bam sam cram multi-tool | Collate/Fixmate/Sort/Markdup SAM/BAM/CRAM file |