Nextflow Modules
Showing module(s) with keyword "fragmentomics"
| Module | Keywords | Description |
|---|---|---|
| nf-core/finaletoolkit/adjustwps | windowed_protection-score genomics fragmentomics | Adjusts raw Windowed Protection Score (WPS) by applying a median filter and Savitsky-Golay filter. |
| nf-core/finaletoolkit/aggbw | genomics aggregation fragmentomics | Aggregates a bigWig signal over constant-length intervals defined in a BED file. |
| nf-core/finaletoolkit/delfi | delfi_score genomics fragmentomics | Calculate the DELFI scores (Cristiano et al., 2019) from a BAM file. |
| nf-core/finaletoolkit/fraglengthbins | sort genomics fragmentomics | Generate a binned fragment profile and a fragment distribution histogram |
| nf-core/finaletoolkit/wps | windowed_protection-score genomics fragmentomics | Calculate the windowed protection score (WPS; Snyder et al., 2016) from a BAM file and a list of transcription start sites. |