Nextflow Modules
Showing module(s) with keyword "long-reads"
| Module | Keywords | Description |
|---|---|---|
| nf-core/links | scaffold long-reads genomics | LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those produced by Oxford Nanopore Technologies Ltd. It can be used to scaffold high-quality draft genome assemblies with any long sequences (eg. ONT reads, PacBio reads, other draft genomes, etc). It is also used to scaffold contig pairs linked by ARCS/ARKS. This module is for LINKS >=2.0.0 and does not support MPET input. |
| nf-core/whatshap/haplotag | haplotypes tagging long-reads nanopore pacbio | Tag reads by haplotype |
| nf-core/whatshap/phase | phasing haplotypes vcf long-reads nanopore pacbio | Phase variants in a VCF file using long-read sequencing data |