Nextflow Modules
Showing module(s) with keyword "multiplexed"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/rami2d/transform | Process | imaging spatialomics multiplexed registration transform | Applies transformations to images using RAMI2D, designed to take the transformation maps produced by rami2d-register |
| nf-core/stainwarpy/extractchannel | Process | image registration histology hne multiplexed channel extraction | Extract a single channel image from multiplexed tissue images using stainwarpy |
| nf-core/stainwarpy/register | Process | image registration histology hne multiplexed | Register H&E stained and Multiplexed tissue images using feature-based image registration |
| nf-core/stainwarpy/transformsegmask | Process | image registration histology hne multiplexed segmentation mask | Transform segmentation mask of multiplexed or H&E stained tissue images using stainwarpy |
| nf-core/tif_registration_stainwarpy | Workflow | image registration histology hne multiplexed segmentation mask | Register H&E stained and multiplexed tissue images and transform segmentation masks using stainwarpy |