Nextflow Modules
Showing module(s) with keyword "printsvevidence"
| Module | Keywords | Description |
|---|---|---|
| nf-core/gatk4/printsvevidence | gatk4 printsvevidence structural variants | WARNING - this tool is still experimental and shouldn't be used in a production setting. Gathers paired-end and split read evidence files for use in the GATK-SV pipeline. Output files are a file containing the location of and orientation of read pairs marked as discordant, and a file containing the clipping location of all soft clipped reads and the orientation of the clipping. |