Nextflow Modules
Showing module(s) with keyword "quickcheck"
| Module | Keywords | Description |
|---|---|---|
| nf-core/samtools/quickcheck | check quickcheck sam bam cram | Quickly check that input files appear to be intact. Checks that beginning of the file contains a valid header (all formats) containing at least one target sequence and then seeks to the end of the file and checks that an end-of-file (EOF) is present and intact (BAM and CRAM only). Alignment records are not checked. The quickcheck module returns a non-zero EXIT_CODE if any input files don't have a valid header or are missing an EOF block. Otherwise EXIT_CODE is zero. |