Nextflow Modules
Showing module(s) with keyword "recalibration"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bam_applybqsr | Workflow | bam cram bqsr recalibration gatk4 | Apply Base Quality Score Recalibration (BQSR) to a BAM or CRAM file using GATK4 ApplyBQSR. Supports scatter-gather across genomic intervals: when more than one interval file is supplied per sample, the interval-level outputs are merged back together with samtools merge. When no intervals are supplied (num_intervals: 0), ApplyBQSR is run once on the whole input and no merge step is performed. |