Nextflow Modules
Showing module(s) with keyword "reference genome"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/mitohifi/findmitoreference | Process | mitochondrial genome reference genome NCBI | Download a mitochondrial genome to be used as reference for MitoHiFi. NOTE: An optional NCBI API key can be supplied to MITOHIFI_FINDMITOREFERENCE. This should be set using Nextflow's secrets functionality: `nextflow secrets set NCBI_API_KEY <key>` See https://www.nextflow.io/docs/latest/secrets.html for more information. |
| nf-core/svdss/index | Process | structural variants sv calling indexing reference genome fm-index | Index a reference genome FASTA file using SVDSS (via ropebwt3), producing either an FMD or FMR index for use with SVDSS smooth and search subcommands |