|
nf-core/custom/getchromsizes
|
fasta
chromosome
indexing
|
Generates a FASTA file of chromosome sizes and a fasta index file
|
|
nf-core/mmseqs/cluster
|
protein sequence
databases
clustering
searching
indexing
mmseqs2
|
Cluster sequences using MMSeqs2 cluster.
|
|
nf-core/mmseqs/createdb
|
protein sequence
databases
clustering
searching
indexing
mmseqs2
|
Create an MMseqs database from an existing FASTA/Q file
|
|
nf-core/mmseqs/createindex
|
protein sequence
databases
clustering
searching
indexing
|
Creates sequence index for mmseqs database
|
|
nf-core/mmseqs/createtsv
|
protein sequence
databases
clustering
searching
indexing
mmseqs2
tsv
|
Create a tsv file from a query and a target database as well as the result database
|
|
nf-core/mmseqs/databases
|
database
indexing
clustering
searching
|
Download an mmseqs-formatted database
|
|
nf-core/mmseqs/linclust
|
protein sequence
databases
clustering
searching
indexing
mmseqs2
|
Cluster sequences in linear time using MMSeqs2 linclust.
|
|
nf-core/mmseqs/makepaddedseqdb
|
protein sequence
databases
clustering
searching
indexing
mmseqs2
|
Create an MMseqs padded database from an existing MMseqs database
|
|
nf-core/mmseqs/search
|
protein sequence
databases
clustering
searching
indexing
mmseqs2
|
Search and calculate a score for similar sequences in a query and a target database.
|
|
nf-core/mmseqs/tsv2exprofiledb
|
protein sequence
databases
clustering
searching
indexing
|
Conversion of expandable profile to databases to the MMseqs2 databases format
|
|
nf-core/simpleaf/index
|
indexing
transcriptome
gene expression
SimpleAF
|
Indexing of transcriptome for gene expression quantification using SimpleAF
|
|
nf-core/sylph/sketch
|
sketch
metagenomics
sylph
indexing
|
Sketching/indexing sequencing reads
|
|
nf-core/sylph/sketchsamples
|
sketch
metagenomics
sylph
samples
indexing
|
Sketching/indexing sequencing reads
|