Nextflow Modules
Showing module(s) with keyword "shapeit"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/shapeit5/ligate | Process | ligate haplotype shapeit | Ligate multiple phased BCF/VCF files into a single whole chromosome file. Typically run to ligate multiple chunks of phased common variants. |
| nf-core/shapeit5/phasecommon | Process | phasing haplotype shapeit | Tool to phase common sites, typically SNP array data, or the first step of WES/WGS data. |
| nf-core/shapeit5/phaserare | Process | phasing rare variants haplotype shapeit | Tool to phase rare variants onto a scaffold of common variants (output of phase_common / ligate). Require feature AVX2. |