Nextflow Modules
Showing module(s) with keyword "spatial transcriptomics"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/baysor/run | Process | segmentation spatial transcriptomics cell clustering imaging | Bayesian segmentation of spatial transcriptomics data. |
| nf-core/vizgenpostprocessing/compiletilesegmentation | Process | vpt vizgen segmentation microscopy spatial transcriptomics | The module compiles segmentation tiles using Vizgen's post-processing tool. |
| nf-core/vizgenpostprocessing/preparesegmentation | Process | vpt vizgen segmentation microscopy spatial transcriptomics | The module prepares the specification JSON file for Vizgen's post-processing tool cell segmentation workflow. |
| nf-core/vizgenpostprocessing/runsegmentationontile | Process | vpt vizgen segmentation microscopy spatial transcriptomics | The module runs the segmentation algorithm on a specific tile using Vizgen's post-processing tool. |