Nextflow Modules
Showing module(s) with keyword "vpt"
| Module | Keywords | Description |
|---|---|---|
| nf-core/vizgenpostprocessing/compiletilesegmentation | vpt vizgen segmentation microscopy spatial transcriptomics | The module compiles segmentation tiles using Vizgen's post-processing tool. |
| nf-core/vizgenpostprocessing/preparesegmentation | vpt vizgen segmentation microscopy spatial transcriptomics | The module prepares the specification JSON file for Vizgen's post-processing tool cell segmentation workflow. |
| nf-core/vizgenpostprocessing/runsegmentationontile | vpt vizgen segmentation microscopy spatial transcriptomics | The module runs the segmentation algorithm on a specific tile using Vizgen's post-processing tool. |