Nextflow Modules
Showing module(s) with keyword "wastewater"
| Module | Keywords | Description |
|---|---|---|
| nf-core/freyja/boot | variants fasta deconvolution wastewater bootstrapping | Bootstrap sample demixing by resampling each site based on a multinomial distribution of read depth across all sites, where the event probabilities were determined by the fraction of the total sample reads found at each site, followed by a secondary resampling at each site according to a multinomial distribution (that is, binomial when there was only one SNV at a site), where event probabilities were determined by the frequencies of each base at the site, and the number of trials is given by the sequencing depth. |
| nf-core/freyja/demix | variants fasta deconvolution wastewater | specify the relative abundance of each known haplotype |
| nf-core/freyja/variants | variants fasta wastewater | call variant and sequencing depth information of the variant |