Nextflow Modules
Showing module(s) with keyword "wxs"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/manta/germline | Process | somatic wgs wxs panel vcf structural variants small indels | Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. |
| nf-core/manta/somatic | Process | somatic wgs wxs panel vcf structural variants small indels | Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. |
| nf-core/manta/tumoronly | Process | somatic wgs wxs panel vcf structural variants small indels | Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. |
| nf-core/muse/call | Process | variant calling somatic wgs wxs vcf | pre-filtering and calculating position-specific summary statistics using the Markov substitution model |
| nf-core/muse/sump | Process | variant calling somatic wgs wxs vcf | Computes tier-based cutoffs from a sample-specific error model which is generated by muse/call and reports the finalized variants |