nf-core/ddamsproteomics

Quantitative shotgun MS proteomics as done in Lehtio lab

This pipeline is no longer being maintained

Please see nf-core/quantms for a more up to date pipeline that covers much of the same functionality.

Build Status

Introduction

The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker / singularity containers making installation trivial and results highly reproducible.

Documentation

The nf-core/ddamsproteomics pipeline comes with documentation about the pipeline, found in the docs/ directory:

1. Installation
2. Pipeline configuration
   • Local installation
   • Adding your own system
3. Running the pipeline
4. Output and how to interpret the results
5. Troubleshooting