Nextflow Registry | Nextflow Pipelines

Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

8 pipeline(s) matching "proteomics".

Pipeline	Keywords	Description
nf-core/ddamsproteomics 0.0.0-e1f270b	proteomics shotgun-ms	Quantitative shotgun MS proteomics
nf-core/diaproteomics 1.2.4	data-independent-proteomics dia-proteomics openms proteomics	Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
nf-core/mspepid 0.0.0-980218a	mass-spectrometry proteomics	This pipeline performs the peptide identification of MS2 spectra from a proteomics experiment. For this, different search algorithm and rescoring approaches can be selected.
nf-core/proteinannotator 1.1.0	annotation proteomics	Generation of sequence-level annotations for amino acid sequences
nf-core/proteogenomicsdb 1.0.0	cosmic gnomad protein-databases proteogenomics +2	The ProteoGenomics database generation workflow creates different protein databases for ProteoGenomics data analysis.
nf-core/proteomicslfq 1.0.0	label-free-quantification openms proteomics	Proteomics label-free quantification (LFQ) analysis pipeline
nf-core/quantms 1.2.0	dia lfq mass-spec mass-spectrometry +4	Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
nf-core/sopa 1.0.1	segmentation spatial-omics spatial-proteomics spatial-transcriptomics +1	Nextflow version of Sopa - spatial omics pipeline and analysis