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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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3 pipeline(s) matching "amplicon".

Pipeline Keywords Description
nf-core/ampliseq
3.0.0
16s 18s amplicon-sequencing edna +12 Amplicon sequencing analysis workflow using DADA2 and QIIME2
nf-core/circdna
1.1.0
ampliconarchitect ampliconsuite circle-seq circular +5 Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.
nf-core/viralrecon
3.0.0
amplicon artic assembly covid-19 +11 Assembly and intrahost/low-frequency variant calling for viral samples