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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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3 pipeline(s) matching "atac-seq".

Pipeline Keywords Description
nf-core/atacseq
2.1.2
atac-seq chromatin-accessibiity ATAC-seq peak-calling and QC analysis pipeline
nf-core/differentialabundance
2.0.0
atac-seq chip-seq deseq2 differential-abundance +6 Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
nf-core/hicar
1.0.0
atac atac-seq hic hicar +2 Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.