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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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4 pipeline(s) matching "identification".

Pipeline Keywords Description
nf-core/detaxizer
1.3.0
 de-identification decontamination edna fastq +10 A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
nf-core/metaboigniter
2.0.1
 identification mass-spectrometry metabolomics ms1 +2 Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
nf-core/pathogensurveillance
1.1.0
 biosurveillance pathogen-identification Surveillance of pathogens using population genomics and sequencing
nf-core/taxmarker
0.0.0-acbf705
 mislabel-identification mislabeling sativa taxmarker +2 Identify taxonomically mislabelled sequences
Nextflow Registry v0.28.0_c73a300 - 12 Oct 2026 09:32:30 (UTC)