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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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4 pipeline(s) matching "taxonomic-profiling".

Pipeline Keywords Description
nf-core/ampliseq
3.0.0
16s 18s amplicon-sequencing edna +12 Amplicon sequencing analysis workflow using DADA2 and QIIME2
nf-core/createtaxdb
3.1.0
database database-builder metagenomic-profiling metagenomics +2 Parallelised and automated construction of metagenomic classifier databases of different tools
nf-core/detaxizer
1.3.0
de-identification decontamination edna fastq +10 A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
nf-core/taxprofiler
2.0.1
classification illumina long-reads metagenomics +7 Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data