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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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4 pipeline(s) matching "illumina".

Pipeline Keywords Description
nf-core/ampliseq
3.0.0
16s 18s amplicon-sequencing edna +12 Amplicon sequencing analysis workflow using DADA2 and QIIME2
nf-core/demultiplex
1.8.0
bases2fastq bcl2fastq demultiplexing elementbiosciences +1 Demultiplexing pipeline for sequencing data
nf-core/taxprofiler
2.0.1
classification illumina long-reads metagenomics +7 Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
nf-core/viralrecon
3.0.0
amplicon artic assembly covid-19 +11 Assembly and intrahost/low-frequency variant calling for viral samples