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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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3 pipeline(s) matching "transcription".

Pipeline Keywords Description
nf-core/marsseq
1.0.3
facs-sorting mars-seq single-cell single-cell-rna-seq +2 MARS-seq v2 pre-processing pipeline with velocity
nf-core/nascent
2.3.0
gro-seq nascent pro-seq rna +2 Nascent Transcription Processing Pipeline
nf-core/tfactivity
0.0.0-5ed1431
open-chromatin-regions transcription-factors transcriptomics Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.